Thanks for your time, Dr. Sassi. So I've contacted Tech-Support, here is the answer:
This problem has been confirmed as bug connected to layers. It happens, as soon as at least one of the selected objects is part of a layer. Without using layers, the shortcuts work properly. Our developer is aware of the issue and I hope this can be fixed soon.
In case anyone else has this issue, for me, the problem was the CVtoolbox plugins; there was "CV-Active layer" enabled, and every newly created object was assigned to default layer.